5IV9 Transport Protein date Mar 20, 2016
title The Lps Transporter Lptde From Klebsiella Pneumoniae, Full-L
authors I.Botos, J.G.Mccarthy, S.K.Buchanan
compound source
Molecule: Lps-Assembly Protein Lptd
Chain: A
Fragment: Unp Residues 25-782
Engineered: Yes
Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Imp, Lptd
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Lps-Assembly Lipoprotein Lpte
Chain: B
Fragment: Unp Residues 20-196
Engineered: Yes

Organism_scientific: Klebsiella Pneumoniae
Organism_taxid: 573
Gene: Lpte, Apu20_03225
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 2 2 2
R_factor 0.301 R_Free 0.344
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.219 155.459 197.757 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.37 Å
ligand C8E enzyme
Gene APU20
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceStructural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens., Botos I, Majdalani N, Mayclin SJ, McCarthy JG, Lundquist K, Wojtowicz D, Barnard TJ, Gumbart JC, Buchanan SK, Structure. 2016 May 3. pii: S0969-2126(16)30043-0. doi:, 10.1016/j.str.2016.03.026. PMID:27161977
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (153 Kb) [Save to disk]
  • Biological Unit Coordinates (5iv9.pdb1.gz) 148 Kb
  • LPC: Ligand-Protein Contacts for 5IV9
  • CSU: Contacts of Structural Units for 5IV9
  • Structure Factors (193 Kb)
  • Retrieve 5IV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IV9 from S2C, [Save to disk]
  • Re-refined 5iv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IV9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iv9] [5iv9_B] [5iv9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IV9
  • Community annotation for 5IV9 at PDBWiki (http://pdbwiki.org)

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