5IVA	Transport Protein	date	Mar 20, 2016
title	The Lps Transporter Lptde From Pseudomonas Aeruginosa, Core
authors	I.Botos, S.K.Buchanan
compound		source
Molecule: Lps-Assembly Protein Lptd Chain: A Fragment: Unp Residues 300-924 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 208964 Strain: Atcc 15692 Pao1 1c Prs 101 Lmg 12228 Gene: Lptd, Imp, Osta, Pa0595 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Lps-Assembly Lipoprotein Lpte Chain: B Fragment: Unp Residues 21-207 Engineered: Yes		Organism_scientific: Pseudomonas Aeruginosa Organism_taxid: 287 Gene: Lpte, Pamh19_1038 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: C 2 2 21	R_factor 0.248 R_Free 0.295
crystal cell	length a length b length c angle alpha angle beta angle gamma 148.923 155.985 115.654 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.99 Å
ligand	C8E	enzyme
Gene	PAMH19
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural and Functional Characterization of the LPS Transporter LptDE from Gram-Negative Pathogens., Botos I, Majdalani N, Mayclin SJ, McCarthy JG, Lundquist K, Wojtowicz D, Barnard TJ, Gumbart JC, Buchanan SK, Structure. 2016 May 3. pii: S0969-2126(16)30043-0. doi:, 10.1016/j.str.2016.03.026. PMID:27161977

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (130 Kb) [Save to disk] Biological Unit Coordinates (5iva.pdb1.gz) 123 Kb LPC: Ligand-Protein Contacts for 5IVA CSU: Contacts of Structural Units for 5IVA Structure Factors (421 Kb) Retrieve 5IVA in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5IVA from S2C, [Save to disk] Re-refined 5iva structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5IVA in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5IVA

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5iva] [5iva_A] [5iva_B] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5IVA

Community annotation for 5IVA at PDBWiki (http://pdbwiki.org)

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