5IWS Transferase date Mar 22, 2016
title Crystal Structure Of The Transporter Malt, The Eiic Domain F Maltose-Specific Phosphotransferase System
authors J.G.Mccoy, Z.Ren, E.J.Levin, M.Zhou, New York Consortium On Memb Protein Structure (Nycomps)
compound source
Molecule: Protein-N(Pi)-Phosphohistidine-Sugar Phosphotrans (Enzyme II Of The Phosphotransferase System) (Pts System Gl Specific Iibc Component);
Chain: A
Fragment: Pts Eiic Type-1 Domain, Residues 3-472
Ec: 2.7.1.69
Engineered: Yes
Organism_scientific: Bacillus Cereus (Strain Zk E33l)
Organism_taxid: 288681
Strain: Zk E33l
Gene: Ptsg, Bce33l0344
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet
symmetry Space Group: I 2 2 2
R_factor 0.237 R_Free 0.282
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.633 108.182 139.329 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.55 Å
ligand GLC, MSE enzyme Transferase E.C.2.7.1.69 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe Structure of a Sugar Transporter of the Glucose EIIC Superfamily Provides Insight into the Elevator Mechanism of Membrane Transport., McCoy JG, Ren Z, Stanevich V, Lee J, Mitra S, Levin EJ, Poget S, Quick M, Im W, Zhou M, Structure. 2016 May 3. pii: S0969-2126(16)30039-9. doi:, 10.1016/j.str.2016.04.003. PMID:27161976
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (5iws.pdb1.gz) 136 Kb
  • LPC: Ligand-Protein Contacts for 5IWS
  • CSU: Contacts of Structural Units for 5IWS
  • Structure Factors (176 Kb)
  • Retrieve 5IWS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IWS from S2C, [Save to disk]
  • Re-refined 5iws structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5IWS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5IWS
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iws_A] [5iws]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5IWS
  • Community annotation for 5IWS at PDBWiki (http://pdbwiki.org)

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