5IZ7 Virus date Mar 25, 2016
title Cryo-Em Structure Of Thermally Stable Zika Virus Strain Hpf
authors V.A.Kostyuchenko, S.Zhang, G.Fibriansah, S.M.Lok
compound source
Molecule: Structural Protein E
Chain: A, C, B
Other_details: Glycosylated At N154
 Organism_scientific: Zika Virus
Organism_common: Zikv
Organism_taxid: 64320
Strain: Hpf2013
Cell_line: C636

Molecule: Structural Protein M
Chain: D, E, F
Organism_scientific: Zika Virus
Organism_common: Zikv
Organism_taxid: 64320
Strain: Hpf2013
Cell_line: C636
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.70 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C, B


F, D, E


Primary referenceStructure of the thermally stable Zika virus., Kostyuchenko VA, Lim EX, Zhang S, Fibriansah G, Ng TS, Ooi JS, Shi J, Lok SM, Nature. 2016 Apr 19;533(7603):425-8. doi: 10.1038/nature17994. PMID:27093288
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (268 Kb) [Save to disk]
  • Biological Unit Coordinates (5iz7.pdb1.gz) 15599 Kb
  • LPC: Ligand-Protein Contacts for 5IZ7
  • CSU: Contacts of Structural Units for 5IZ7
  • Retrieve 5IZ7 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5IZ7 from S2C, [Save to disk]
    • View 5IZ7 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5IZ7
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5iz7] [5iz7_B] [5iz7_D] [5iz7_C] [5iz7_E] [5iz7_F] [5iz7_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5IZ7
  • Community annotation for 5IZ7 at PDBWiki (http://pdbwiki.org)

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