5J0Z Membrane Protein date Mar 28, 2016
title Crystal Structure Of Glic In Complex With Dha
authors S.Basak, N.Schmandt, S.Chakrapani
compound source
Molecule: Proton-Gated Ion Channel
Chain: A, B, C, D, E
Synonym: Glic,Ligand-Gated Ion Channel,Lgic
Engineered: Yes
Organism_scientific: Gloeobacter Violaceus (Strain Pcc 7421
Organism_taxid: 251221
Strain: Pcc 7421
Gene: Glvi, Glr4197
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.232 R_Free 0.261
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.868 133.320 159.919 90.00 102.36 90.00
method X-Ray Diffractionresolution 3.25 Å
ligand ACT, CL, HXA, LMT, PLC, SO4 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B
  • sodium channel activity


  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (265 Kb) [Save to disk]
  • Biological Unit Coordinates (5j0z.pdb1.gz) 258 Kb
  • LPC: Ligand-Protein Contacts for 5J0Z
  • CSU: Contacts of Structural Units for 5J0Z
  • Structure Factors (2561 Kb)
  • Retrieve 5J0Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J0Z from S2C, [Save to disk]
  • Re-refined 5j0z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J0Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J0Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j0z_E] [5j0z] [5j0z_D] [5j0z_B] [5j0z_C] [5j0z_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J0Z
  • Community annotation for 5J0Z at PDBWiki (http://pdbwiki.org)

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