5J2M	Transferase Dna	date	Mar 29, 2016
title	Hiv-1 Reverse Transcriptase In Complex With Dna And Efda-Tri A Translocation-Defective Rt Inhibitor
authors	Z.L.Salie, K.A.Kirby, S.G.Sarafianos
compound		source
Molecule: Hiv-1 Reverse Transcriptase P51 Subunit Chain: A Fragment: Unp Residues 1-560 Synonym: Pr160gag-Pol Ec: 2.7.7.- Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2); Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Isolate Hxb2 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Pcdfduet1
Molecule: Hiv-1 Reverse Transcriptase P51 Subunit Chain: B Fragment: Unp Residues 1-440 Synonym: Pr160gag-Pol Ec: 2.7.7.- Engineered: Yes Mutation: Yes		Organism_scientific: Human Immunodeficiency Virus Type 1 Gr Subtype B (Isolate Hxb2); Organism_common: Hiv-1 Organism_taxid: 11706 Strain: Isolate Hxb2 Gene: Gag-Pol Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3)-Ril Expression_system_vector_type: Plasmid Expression_system_plasmid: Prsfduet1
Molecule: Dna (5'- D(Apcpapgptpcpcpcptpgptptpcpgpgp(Mrg) Pcpgpcpcpg)-3'); Chain: P Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676
Molecule: Dna (27-Mer) Chain: T Engineered: Yes		Synthetic: Yes Organism_scientific: Human Immunodeficiency Virus 1 Organism_taxid: 11676
symmetry	Space Group: C 2 2 21	R_factor 0.199 R_Free 0.233
crystal cell	length a length b length c angle alpha angle beta angle gamma 167.468 169.758 101.951 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.43 Å
ligand	6FN, MG, MRG	enzyme	Transferase E.C.2.7.7 BRENDA
Gene Ontology	Chain Function Process Component A B
Primary reference	Structural basis of HIV inhibition by translocation-defective RT inhibitor 4'-ethynyl-2-fluoro-2'-deoxyadenosine (EFdA)., Salie ZL, Kirby KA, Michailidis E, Marchand B, Singh K, Rohan LC, Kodama EN, Mitsuya H, Parniak MA, Sarafianos SG, Proc Natl Acad Sci U S A. 2016 Aug 16;113(33):9274-9. doi:, 10.1073/pnas.1605223113. Epub 2016 Aug 3. PMID:27489345

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk] Biological Unit Coordinates (5j2m.pdb1.gz) 181 Kb LPC: Ligand-Protein Contacts for 5J2M CSU: Contacts of Structural Units for 5J2M Structure Factors (657 Kb) Retrieve 5J2M in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5J2M from S2C, [Save to disk] Re-refined 5j2m structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

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Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5j2m] [5j2m_T] [5j2m_B] [5j2m_A] [5j2m_P] SWISS-PROT database: Domain organization of by SWISSPFAM

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