5J31 Signaling Protein date Mar 30, 2016
title Crystal Structure Of 14-3-3zeta In Complex With An Alkyne Cr Cyclic Peptide Derived From Exos
authors K.Wallraven, P.Cromm, D.Bier, A.Glas, T.Grossmann
compound source
Molecule: 14-3-3 Protein Zetadelta
Chain: A, B
Synonym: Protein Kinase C Inhibitor Protein 1,Kcip-1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ywhaz
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: Rosetta
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pproex Htb

Molecule: Exoenzyme S
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Pseudomonas Aeruginosa
Organism_taxid: 287
symmetry Space Group: P 21 21 21
R_factor 0.163 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
83.940 105.580 114.510 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand BEZ, MK8, ZS8 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • positive regulation of prote...

  • Primary referenceConstraining an Irregular Peptide Secondary Structure through Ring-Closing Alkyne Metathesis., Cromm PM, Wallraven K, Glas A, Bier D, Furstner A, Ottmann C, Grossmann TN, Chembiochem. 2016 Sep 6. doi: 10.1002/cbic.201600362. PMID:27596722
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (5j31.pdb1.gz) 84 Kb
  • LPC: Ligand-Protein Contacts for 5J31
  • CSU: Contacts of Structural Units for 5J31
  • Structure Factors (866 Kb)
  • Retrieve 5J31 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J31 from S2C, [Save to disk]
  • Re-refined 5j31 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J31 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J31
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j31_D] [5j31_C] [5j31_B] [5j31_A] [5j31]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5J31: [14_3_3 ] by SMART
  • Other resources with information on 5J31
  • Community annotation for 5J31 at PDBWiki (http://pdbwiki.org)

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