5J3H Hormone Receptor Immune System date Mar 30, 2016
title Human Insulin Receptor Domains L1-Cr In Complex With Peptide And 83-7 Fv
authors M.Lawrence, J.Menting, C.Lawrence
compound source
Molecule: Peptide S519c16
Chain: B
Engineered: Yes
Other_details: 16 C-Terminal Residues Of Peptide S519: Ser- Glu-Ser-Phe-Tyr-Asp-Trp-Phe-Glu-Arg-Gln-Leu;
Synthetic: Yes
Organism_scientific: Endothia Gyrosa
Organism_taxid: 40263

Molecule: Mab 83-7 Fab Heavy Chain
Chain: C
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Brevibacillus
Expression_system_taxid: 55080

Molecule: Mab 83-7 Fab Light Chain
Chain: D
Engineered: Yes

Organism_scientific: Mus Musculus
Organism_taxid: 10090
Expression_system: Brevibacillus
Expression_system_taxid: 55080

Molecule: Insulin Receptor
Chain: E
Fragment: Unp Residues 28-337
Synonym: Ir
Ec: 2.7.10.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Insr
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_strain: Lec8
symmetry Space Group: P 41 21 2
R_factor 0.226 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
176.776 176.776 86.186 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.27 Å
ligand BMA, FUC, MAN, NAG enzyme Transferase E.C.2.7.10.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
E


Primary referenceInsulin Mimetic Peptide Disrupts the Primary Binding Site of the Insulin Receptor., Lawrence CF, Margetts MB, Menting JG, Smith NA, Smith BJ, Ward CW, Lawrence MC, J Biol Chem. 2016 Jun 8. pii: jbc.M116.732180. PMID:27281820
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (183 Kb) [Save to disk]
  • Biological Unit Coordinates (5j3h.pdb1.gz) 176 Kb
  • LPC: Ligand-Protein Contacts for 5J3H
  • CSU: Contacts of Structural Units for 5J3H
  • Structure Factors (601 Kb)
  • Retrieve 5J3H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J3H from S2C, [Save to disk]
  • Re-refined 5j3h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J3H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J3H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j3h_C] [5j3h_B] [5j3h_E] [5j3h_D] [5j3h]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5J3H: [FU] [IGv ] by SMART
  • Other resources with information on 5J3H
  • Community annotation for 5J3H at PDBWiki (http://pdbwiki.org)

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