5J3V Transport Protein date Mar 31, 2016
title Crystal Structure Of Human Karyopherin-Beta2 Bound To The Hi Tail
authors M.Soniat, Y.M.Chook
compound source
Molecule: Transportin-1,Transportin-1
Chain: A, B
Synonym: Importin Beta-2,Karyopherin Beta-2,M9 Region Inter Protein,Mip,Importin Beta-2,Karyopherin Beta-2,M9 Region In Protein,Mip;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnpo1, Kpnb2, Mip1, Trn
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3
Chain: C, D
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.213 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
150.296 154.185 192.661 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.05 Å
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C


Primary referenceKaryopherin-beta2 Recognition of a PY-NLS Variant that Lacks the Proline-Tyrosine Motif., Soniat M, Chook YM, Structure. 2016 Sep 7. pii: S0969-2126(16)30230-1. doi:, 10.1016/j.str.2016.07.018. PMID:27618664
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (270 Kb) [Save to disk]
  • Biological Unit Coordinates (5j3v.pdb1.gz) 136 Kb
  • Biological Unit Coordinates (5j3v.pdb2.gz) 133 Kb
  • CSU: Contacts of Structural Units for 5J3V
  • Structure Factors (759 Kb)
  • Retrieve 5J3V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J3V from S2C, [Save to disk]
  • Re-refined 5j3v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J3V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J3V
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j3v_A] [5j3v_C] [5j3v_D] [5j3v] [5j3v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5J3V: [IBN_N ] by SMART
  • Other resources with information on 5J3V
  • Community annotation for 5J3V at PDBWiki (http://pdbwiki.org)

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