5J5K Lipid Binding Protein date Apr 03, 2016
title Crystal Structure Of Afmp4p In Complex With Palmitic Acid
authors H.Zhang, Q.Hao
compound source
Molecule: Uncharacterized Protein
Chain: A
Fragment: Unp Residues 38-194
Engineered: Yes
 Organism_scientific: Neosartorya Fumigata (Strain Atcc Mya- Af293 Cbs 101355 Fgsc A1100);
Organism_taxid: 330879
Strain: Atcc Mya-4609 Af293 Cbs 101355 Fgsc A1100
Gene: Afua_2g17630
Expression_system: Pichia Pastoris
Expression_system_common: Yeast
Expression_system_taxid: 638632
Expression_system_strain: X33
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Ppic9k
symmetry Space Group: I 4 3 2
R_factor 0.149 R_Free 0.184
crystal
cell
length a length b length c angle alpha angle beta angle gamma
124.836 124.836 124.836 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.95 Å
ligand MAN, PLM enzyme
Gene AFUA
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (54 Kb) [Save to disk]
  • Biological Unit Coordinates (5j5k.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5J5K
  • CSU: Contacts of Structural Units for 5J5K
  • Structure Factors (265 Kb)
  • Retrieve 5J5K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J5K from S2C, [Save to disk]
  • Re-refined 5j5k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5J5K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5J5K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j5k] [5j5k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5J5K
  • Community annotation for 5J5K at PDBWiki (http://pdbwiki.org)

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