5J67 Membrane Protein date Apr 04, 2016
title Structure Of Astrotactin-2, A Conserved Vertebrate-Specific Perforin-Like Membrane Protein Involved In Neuronal Develop
authors T.Ni, K.Harlos, R.J.C.Gilbert
compound source
Molecule: Astrotactin-2
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Astn2, Kiaa0634
Expression_system: Homo Sapiens
Expression_system_common: Human
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293
symmetry Space Group: P 1
R_factor 0.233 R_Free 0.259
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.240 108.190 111.360 87.18 84.50 65.67
method X-Ray Diffractionresolution 3.16 Å
ligand BMA, I3P, MAN, NAG enzyme
Primary referenceStructure of astrotactin-2: a conserved vertebrate-specific and perforin-like membrane protein involved in neuronal development., Ni T, Harlos K, Gilbert R, Open Biol. 2016 May;6(5). pii: 160053. doi: 10.1098/rsob.160053. Epub 2016 May 4. PMID:27249642
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (774 Kb) [Save to disk]
  • Biological Unit Coordinates (5j67.pdb1.gz) 192 Kb
  • Biological Unit Coordinates (5j67.pdb2.gz) 197 Kb
  • Biological Unit Coordinates (5j67.pdb3.gz) 195 Kb
  • Biological Unit Coordinates (5j67.pdb4.gz) 196 Kb
  • LPC: Ligand-Protein Contacts for 5J67
  • CSU: Contacts of Structural Units for 5J67
  • Structure Factors (5052 Kb)
  • Retrieve 5J67 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J67 from S2C, [Save to disk]
  • Re-refined 5j67 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J67 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J67
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j67_C] [5j67_A] [5j67_B] [5j67] [5j67_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5J67: [FN3] [MACPF ] by SMART
  • Other resources with information on 5J67
  • Community annotation for 5J67 at PDBWiki (http://pdbwiki.org)

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