5J7S Transferase Transferase Inhibitor date Apr 06, 2016
title Crystal Structure Of Sm1-71 Bound To Tak1-Tab1
authors D.Gurbani, K.D.Westover
compound source
Molecule: Mitogen-Activated Protein Kinase Kinase Kinase 7 Activated Kinase 1 And Map3k7-Binding Protein 1 Chimera;
Chain: A
Fragment: Unp O43318 Residues 31-303, Q15750 Residues 468-5
Synonym: Transforming Growth Factor-Beta-Activated Kinase 1 Activated Kinase 1,Mitogen-Activated Protein Kinase Kinase Interacting Protein 1,Tgf-Beta-Activated Kinase 1-Binding P Tak1-Binding Protein 1;
Ec: 2.7.11.25
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Map3k7, Tak1, Tab1, Map3k7ip1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
symmetry Space Group: I 2 2 2
R_factor 0.228 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.234 134.060 146.814 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand 6H3 enzyme Transferase E.C.2.7.11.25 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-guided development of covalent TAK1 inhibitors., Tan L, Gurbani D, Weisberg EL, Hunter JC, Li L, Jones DS, Ficarro SB, Mowafy S, Tam CP, Rao S, Du G, Griffin JD, Sorger PK, Marto JA, Westover KD, Gray NS, Bioorg Med Chem. 2017 Feb 1;25(3):838-846. doi: 10.1016/j.bmc.2016.11.035. Epub, 2016 Dec 9. PMID:28011204
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (92 Kb) [Save to disk]
  • Biological Unit Coordinates (5j7s.pdb1.gz) 87 Kb
  • LPC: Ligand-Protein Contacts for 5J7S
  • CSU: Contacts of Structural Units for 5J7S
  • Structure Factors (480 Kb)
  • Retrieve 5J7S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5J7S from S2C, [Save to disk]
  • Re-refined 5j7s structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5J7S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5J7S
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5j7s_A] [5j7s]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5J7S
  • Community annotation for 5J7S at PDBWiki (http://pdbwiki.org)

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