5JA0 Transferase date Apr 11, 2016
title Crystal Structure Of Human Fpps With Allosterically Bound Fp
authors J.Park, M.Zielinski, Y.S.Tsantrizos, A.M.Berghuis
compound source
Molecule: Farnesyl Pyrophosphate Synthase
Chain: F
Fragment: Unp Residues 67-419
Synonym: Fps,(2e,6e)-Farnesyl Diphosphate Synthase, Dimethylallyltranstransferase,Farnesyl Diphosphate Synthase Geranyltranstransferase;
Ec: 2.5.1.10,2.5.1.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fdps, Fps, Kiaa1293
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 41 21 2
R_factor 0.172 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
110.890 110.890 77.480 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand FPP, PO4 enzyme Transferase E.C.2.5.1.10 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F


Primary referenceHuman farnesyl pyrophosphate synthase is allosterically inhibited by its own product., Park J, Zielinski M, Magder A, Tsantrizos YS, Berghuis AM, Nat Commun. 2017 Jan 18;8:14132. doi: 10.1038/ncomms14132. PMID:28098152
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (119 Kb) [Save to disk]
  • Biological Unit Coordinates (5ja0.pdb1.gz) 223 Kb
  • LPC: Ligand-Protein Contacts for 5JA0
  • CSU: Contacts of Structural Units for 5JA0
  • Structure Factors (829 Kb)
  • Retrieve 5JA0 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JA0 from S2C, [Save to disk]
  • Re-refined 5ja0 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JA0 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JA0
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ja0_F] [5ja0]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JA0
  • Community annotation for 5JA0 at PDBWiki (http://pdbwiki.org)

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