5JAE Membrane Protein date Apr 12, 2016
title Leut In The Outward-Oriented, Na+-Free Return State, P21 For 6.5
authors L.Malinauskaite, C.Sahin, S.Said, J.Grouleff, A.Shahsavar, H.Bjer P.Noer, K.Severinsen, T.Boesen, B.Schiott, S.Sinning, P.Nissen
compound source
Molecule: Transporter
Chain: A, B
Engineered: Yes
 Organism_scientific: Aquifex Aeolicus (Strain Vf5)
Organism_taxid: 224324
Strain: Vf5
Gene: Snf, Aq_2077
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_variant: C41
symmetry Space Group: P 1 21 1
R_factor 0.223 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.570 92.080 92.470 90.00 95.18 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BOG enzyme
Gene AQ
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA conserved leucine occupies the empty substrate site of LeuT in the Na(+)-free return state., Malinauskaite L, Said S, Sahin C, Grouleff J, Shahsavar A, Bjerregaard H, Noer P, Severinsen K, Boesen T, Schiott B, Sinning S, Nissen P, Nat Commun. 2016 May 25;7:11673. doi: 10.1038/ncomms11673. PMID:27221344
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (342 Kb) [Save to disk]
  • Biological Unit Coordinates (5jae.pdb1.gz) 169 Kb
  • Biological Unit Coordinates (5jae.pdb2.gz) 169 Kb
  • LPC: Ligand-Protein Contacts for 5JAE
  • CSU: Contacts of Structural Units for 5JAE
  • Structure Factors (1018 Kb)
  • Retrieve 5JAE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JAE from S2C, [Save to disk]
  • Re-refined 5jae structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JAE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JAE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jae] [5jae_A] [5jae_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JAE
  • Community annotation for 5JAE at PDBWiki (http://pdbwiki.org)

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