5JBL Hydrolase date Apr 13, 2016
title Structure Of The Bacteriophage T4 Capsid Assembly Protease,
authors A.Fokine, M.G.Rossmann
compound source
Molecule: Prohead Core Protein Protease
Chain: A, B, C, D, E
Synonym: Protein Gp21
Ec: 3.4.99.-
Engineered: Yes
Other_details: The Catalytic Residues Ser140 And His85 Of T Protease Were Mutated To Alanines. In Addition Met45 Was Mu Leu.
Organism_scientific: Enterobacteria Phage T4
Organism_taxid: 10665
Gene: 21
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.172 R_Free 0.205
crystal
cell
length a length b length c angle alpha angle beta angle gamma
41.745 124.041 88.959 90.00 89.96 90.00
method X-Ray Diffractionresolution 1.94 Å
ligand
enzyme Hydrolase E.C.3.4.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceCommon Evolutionary Origin of Procapsid Proteases, Phage Tail Tubes, and Tubes of Bacterial Type VI Secretion Systems., Fokine A, Rossmann MG, Structure. 2016 Nov 1;24(11):1928-1935. doi: 10.1016/j.str.2016.08.013. Epub 2016, Sep 22. PMID:27667692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (279 Kb) [Save to disk]
  • Biological Unit Coordinates (5jbl.pdb1.gz) 271 Kb
  • CSU: Contacts of Structural Units for 5JBL
  • Structure Factors (754 Kb)
  • Retrieve 5JBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JBL from S2C, [Save to disk]
  • Re-refined 5jbl structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JBL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jbl_D] [5jbl_B] [5jbl_A] [5jbl] [5jbl_C] [5jbl_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JBL
  • Community annotation for 5JBL at PDBWiki (http://pdbwiki.org)

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