5JCZ Motor Protein date Apr 15, 2016
title Rab11 Bound To Myova-Gtd
authors O.Pylypenko, W.Attanda, C.Gauquelin, G.Malherbes, A.Houdusse
compound source
Molecule: Ras-Related Protein Rab-11a
Chain: A, D, I
Synonym: Rab-11,Yl8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab11a, Rab11
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008

Molecule: Unconventional Myosin-Va
Chain: B, C, E
Fragment: Unp Residues 1437-1828
Synonym: Dilute Myosin Heavy Chain,Non-Muscle,Myosin Heavy Myosin-12,Myoxin;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Myo5a, Myh12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: C 1 2 1
R_factor 0.180 R_Free 0.208
crystal
cell
length a length b length c angle alpha angle beta angle gamma
215.790 128.420 89.020 90.00 98.27 90.00
method X-Ray Diffractionresolution 2.06 Å
ligand ACT, BEF, EDO, GDP, GOL, MG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, I


Primary referenceCoordinated recruitment of Spir actin nucleators and myosin V motors to Rab11 vesicle membranes., Pylypenko O, Welz T, Tittel J, Kollmar M, Chardon F, Malherbe G, Weiss S, Michel CI, Samol-Wolf A, Grasskamp AT, Hume A, Goud B, Baron B, England P, Titus MA, Schwille P, Weidemann T, Houdusse A, Kerkhoff E, Elife. 2016 Sep 13;5. pii: e17523. doi: 10.7554/eLife.17523. PMID:27623148
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (556 Kb) [Save to disk]
  • Biological Unit Coordinates (5jcz.pdb1.gz) 190 Kb
  • Biological Unit Coordinates (5jcz.pdb2.gz) 193 Kb
  • Biological Unit Coordinates (5jcz.pdb3.gz) 171 Kb
  • LPC: Ligand-Protein Contacts for 5JCZ
  • CSU: Contacts of Structural Units for 5JCZ
  • Structure Factors (1330 Kb)
  • Retrieve 5JCZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JCZ from S2C, [Save to disk]
  • Re-refined 5jcz structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JCZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JCZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jcz_D] [5jcz_E] [5jcz_I] [5jcz_C] [5jcz_A] [5jcz] [5jcz_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5JCZ: [DIL] [RAB ] by SMART
  • Other resources with information on 5JCZ
  • Community annotation for 5JCZ at PDBWiki (http://pdbwiki.org)

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