5JDS	Immune System	date	Apr 17, 2016
title	Crystal Structure Of Pd-L1 Complexed With A Nanobody At 1.7 Resolution
authors	A.Zhou, H.Wei
compound		source
Molecule: Nanobody Chain: B Engineered: Yes		Organism_scientific: Camelidae Organism_taxid: 9835 Expression_system: Homo Sapiens Expression_system_taxid: 9606
Molecule: Programmed Cell Death 1 Ligand 1 Chain: A Fragment: Unp Residues 18-132 Synonym: Programmed Death Ligand 1,B7 Homolog 1,B7-H1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Cd274, B7h1, Pdcd1l1, Pdcd1lg1, Pdl1 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 61	R_factor 0.178 R_Free 0.204
crystal cell	length a length b length c angle alpha angle beta angle gamma 83.130 83.130 73.230 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.70 Å
ligand	CL, NA, SO4	enzyme
Primary reference	Structural basis of a novel PD-L1 nanobody for immune checkpoint blockade., Zhang F, Wei H, Wang X, Bai Y, Wang P, Wu J, Jiang X, Wang Y, Cai H, Xu T, Zhou A, Cell Discov. 2017 Mar 7;3:17004. doi: 10.1038/celldisc.2017.4. eCollection 2017. PMID:28280600

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (5jds.pdb1.gz) 82 Kb LPC: Ligand-Protein Contacts for 5JDS CSU: Contacts of Structural Units for 5JDS Structure Factors (2193 Kb) Retrieve 5JDS in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JDS from S2C, [Save to disk] Re-refined 5jds structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JDS in 3D

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Visual 3D analysis of 5JDS

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jds_A] [5jds_B] [5jds] SWISS-PROT database: Domain organization of by SWISSPFAM

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