5JHG Signaling Protein Transcription date Apr 21, 2016
title Crystal Structure Of The Complex Between The Human Rhoa And Domain Of Human Arhgef11
authors R.Wang, Q.Chen, H.Zhang, Z.Yan, J.Li, L.Miao, F.Wang
compound source
Molecule: Rho Guanine Nucleotide Exchange Factor 11
Chain: A, E
Fragment: Unp Residues 714-1081
Synonym: Pdz-Rhogef
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Arhgef11, Kiaa0380
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid

Molecule: Transforming Protein Rhoa
Chain: B, F
Fragment: Unp Residues 1-181
Synonym: Rho Cdna Clone 12,H12
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rhoa, Arh12, Arha, Rho12
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
symmetry Space Group: P 1 21 1
R_factor 0.221 R_Free 0.270
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.440 118.589 88.003 90.00 113.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


F, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (181 Kb) [Save to disk]
  • Biological Unit Coordinates (5jhg.pdb1.gz) 89 Kb
  • Biological Unit Coordinates (5jhg.pdb2.gz) 89 Kb
  • LPC: Ligand-Protein Contacts for 5JHG
  • CSU: Contacts of Structural Units for 5JHG
  • Structure Factors (1276 Kb)
  • Retrieve 5JHG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JHG from S2C, [Save to disk]
  • Re-refined 5jhg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JHG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JHG
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jhg] [5jhg_B] [5jhg_F] [5jhg_A] [5jhg_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JHG
  • Community annotation for 5JHG at PDBWiki (http://pdbwiki.org)

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