5JJE Signaling Protein date Apr 23, 2016
title Structure Of The Sriihtrii Complex In I212121 Space Group (
authors A.Ishchenko, E.Round, V.Borshchevskiy, S.Grudinin, I.Gushchin, J. A.Remeeva, V.Polovinkin, P.Utrobin, T.Balandin, M.Engelhard, G.B V.Gordeliy
compound source
Molecule: Sensory Rhodopsin-2
Chain: A
Synonym: Sensory Rhodopsin II,Sr-II
Engineered: Yes
 Organism_scientific: Natronomonas Pharaonis
Organism_common: Natronobacterium Pharaonis
Organism_taxid: 2257
Gene: Sop2, Sopii
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Sensory Rhodopsin II Transducer
Chain: B
Synonym: Htr-II,Methyl-Accepting Phototaxis Protein II,Mpp-
Engineered: Yes
Organism_scientific: Natronomonas Pharaonis
Organism_common: Natronobacterium Pharaonis
Organism_taxid: 2257
Gene: Htr2, Htrii
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 21 21 21
R_factor 0.197 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
49.642 113.661 125.995 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand BOG, LFA, RET enzyme
Gene
Ontology
ChainFunctionProcessComponent
A
  • ion channel activity


    • B


    Primary referenceNew Insights on Signal Propagation by Sensory Rhodopsin II/Transducer Complex., Ishchenko A, Round E, Borshchevskiy V, Grudinin S, Gushchin I, Klare JP, Remeeva A, Polovinkin V, Utrobin P, Balandin T, Engelhard M, Buldt G, Gordeliy V, Sci Rep. 2017 Feb 6;7:41811. doi: 10.1038/srep41811. PMID:28165484
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (93 Kb) [Save to disk]
  • Biological Unit Coordinates (5jje.pdb1.gz) 173 Kb
  • LPC: Ligand-Protein Contacts for 5JJE
  • CSU: Contacts of Structural Units for 5JJE
  • Structure Factors (1902 Kb)
  • Retrieve 5JJE in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JJE from S2C, [Save to disk]
  • Re-refined 5jje structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5JJE in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JJE
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jje_A] [5jje_B] [5jje]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5JJE
  • Community annotation for 5JJE at PDBWiki (http://pdbwiki.org)

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