5JKM Oxidoreductase date Apr 26, 2016
title Binary Crystal Structure Of Positively And Negatively Superc Variants Ftn(Pos) And Ftn(Neg) From Human Heavy Chain Ferri Acetate Condition)
authors M.Kuenzle, T.Beck
compound source
Molecule: Ferritin Heavy Chain
Chain: A, B, C, D, E, F
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein,Positively Charged Variant Of Human Heavy Chain Fer
Ec: 1.16.3.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ferritin Heavy Chain
Chain: G, H, I, J, K, L
Synonym: Ferritin H Subunit,Cell Proliferation-Inducing Gen Protein,Negatively Charged Variant Of Human Heavy Chain Fer
Ec: 1.16.3.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fth1, Fth, Fthl6, Oksw-Cl.84, Pig15
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 4
R_factor 0.159 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
126.840 126.840 175.020 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand FE, GOL, MG enzyme Oxidoreductase E.C.1.16.3.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, J, K, E, B, H, C, D, I, G, L


Primary referenceBinary Protein Crystals for the Assembly of Inorganic Nanoparticle Superlattices., Kunzle M, Eckert T, Beck T, J Am Chem Soc. 2016 Oct 5;138(39):12731-12734. Epub 2016 Sep 21. PMID:27617514
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (374 Kb) [Save to disk]
  • Biological Unit Coordinates (5jkm.pdb1.gz) 736 Kb
  • Biological Unit Coordinates (5jkm.pdb2.gz) 714 Kb
  • LPC: Ligand-Protein Contacts for 5JKM
  • CSU: Contacts of Structural Units for 5JKM
  • Structure Factors (5233 Kb)
  • Retrieve 5JKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JKM from S2C, [Save to disk]
  • Re-refined 5jkm structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JKM
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jkm_H] [5jkm_K] [5jkm_G] [5jkm_F] [5jkm_B] [5jkm_I] [5jkm] [5jkm_C] [5jkm_J] [5jkm_A] [5jkm_D] [5jkm_L] [5jkm_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JKM
  • Community annotation for 5JKM at PDBWiki (http://pdbwiki.org)

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