5JP2 Signaling Protein date May 03, 2016
title Fcho1 Mu Homology Domain (Danio Rerio) With Bound Eps15 Pept
authors A.J.Mccoy, A.Wrobel, D.J.Owen
compound source
Molecule: Epidermal Growth Factor Receptor Substrate 15
Chain: E, F
Fragment: Unp Residues 615-637
Synonym: Protein Eps15,Protein Af-1p
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Eps15, Af1p
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: F-Bar Domain Only Protein 1
Chain: A, B
Fragment: Unp Residues 615-900
Engineered: Yes

Organism_scientific: Danio Rerio
Organism_common: Zebrafish
Organism_taxid: 7955
Gene: Fcho1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.199 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
239.778 239.778 44.091 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceTransient Fcho1/2Eps15/RAP-2 Nanoclusters Prime the AP-2 Clathrin Adaptor for Cargo Binding., Ma L, Umasankar PK, Wrobel AG, Lymar A, McCoy AJ, Holkar SS, Jha A, Pradhan-Sundd T, Watkins SC, Owen DJ, Traub LM, Dev Cell. 2016 Jun 6;37(5):428-43. doi: 10.1016/j.devcel.2016.05.003. Epub 2016, May 26. PMID:27237791
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (100 Kb) [Save to disk]
  • Biological Unit Coordinates (5jp2.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (5jp2.pdb2.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 5JP2
  • CSU: Contacts of Structural Units for 5JP2
  • Structure Factors (1088 Kb)
  • Retrieve 5JP2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JP2 from S2C, [Save to disk]
  • Re-refined 5jp2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5JP2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JP2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jp2_E] [5jp2_A] [5jp2_F] [5jp2_B] [5jp2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JP2
  • Community annotation for 5JP2 at PDBWiki (http://pdbwiki.org)

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