5JPL LP2006, a handcuff-topology lasso peptide antibiotic date 2016-05-03
authors Tietz, J.I., Schwalen, C.J., Blair, P.M., Zakai, U.I., Mitchell, D.A.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
Primary referenceA new genome-mining tool redefines the lasso peptide biosynthetic landscape., Tietz JI, Schwalen CJ, Patel PS, Maxson T, Blair PM, Tai HC, Zakai UI, Mitchell DA, Nat Chem Biol. 2017 Feb 28. doi: 10.1038/nchembio.2319. PMID:28244986
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (67 Kb) [Save to disk]
  • Biological Unit Coordinates (5jpl.pdb1.gz) 5 Kb
  • CSU: Contacts of Structural Units for 5JPL
  • Original NMR restraints for 5JPL from PDB
  • Retrieve 5JPL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JPL from S2C, [Save to disk]
  • View 5JPL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JPL
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jpl_A] [5jpl]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JPL
  • Community annotation for 5JPL at PDBWiki (http://pdbwiki.org)

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