5JQE	Hydrolase	date	May 04, 2016
title	Crystal Structure Of Caspase8 Tded
authors	T.Fu, Y.Li, A.Lu, H.Wu
compound		source
Molecule: Sugar Abc Transporter Substrate-Binding Protein,C Chimera; Chain: A Synonym: Casp-8,Apoptotic Cysteine Protease,Apoptotic Prote Cap4,Fadd-Homologous Iceced-3-Like Protease,Fadd-Like Ice, Like Apoptotic Protease 5,Mort1-Associated Ced-3 Homolog,Ma Ec: 3.4.22.61 Engineered: Yes		Organism_scientific: Escherichia Coli, Homo Sapiens Organism_common: Human Organism_taxid: 562 Gene: Male, Ac066_14980, Casp8, Mch5 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21(De3) Ripl Expression_system_vector_type: Plasmid Expression_system_plasmid: Pdb-His-Mbp
symmetry	Space Group: P 64	R_factor 0.216 R_Free 0.274
crystal cell	length a length b length c angle alpha angle beta angle gamma 130.923 130.923 67.956 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.16 Å
ligand		enzyme	Hydrolase E.C.3.4.22.61 BRENDA
Gene	AC066
Gene Ontology	Chain Function Process Component A carbohydrate transmembrane t...
Primary reference	Cryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex., Fu TM, Li Y, Lu A, Li Z, Vajjhala PR, Cruz AC, Srivastava DB, DiMaio F, Penczek PA, Siegel RM, Stacey KJ, Egelman EH, Wu H, Mol Cell. 2016 Oct 20;64(2):236-250. doi: 10.1016/j.molcel.2016.09.009. Epub 2016, Oct 13. PMID:27746017

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (91 Kb) [Save to disk] Biological Unit Coordinates (5jqe.pdb1.gz) 87 Kb CSU: Contacts of Structural Units for 5JQE Structure Factors (303 Kb) Retrieve 5JQE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JQE from S2C, [Save to disk] Re-refined 5jqe structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JQE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JQE

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jqe_A] [5jqe] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JQE: [DED ] by SMART

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