5JTV	Hydrolase	date	May 09, 2016
title	Usp7cd-Ubl45 In Complex With Ubiquitin
authors	J.M.Murray, L.Rouge
compound		source
Molecule: Ubiquitin Carboxyl-Terminal Hydrolase 7 Chain: A, C, E, G Fragment: Unp Residues 193-538 Linked Via Ggsggsggsg To Res 1102; Synonym: Deubiquitinating Enzyme 7,Herpesvirus-Associated U Specific Protease,Ubiquitin Thioesterase 7,Ubiquitin-Specif Processing Protease 7,Deubiquitinating Enzyme 7,Herpesvirus Associated Ubiquitin-Specific Protease,Ubiquitin Thioestera Ubiquitin-Specific-Processing Protease 7; Ec: 3.4.19.12 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Usp7, Hausp Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Polyubiquitin-B Chain: B, D, F, H Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ubb Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 21 21 21	R_factor 0.239 R_Free 0.269
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.611 115.520 257.822 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.31 Å
ligand		enzyme	Hydrolase E.C.3.4.19.12 BRENDA
Gene Ontology	Chain Function Process Component A, C, G, E

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (859 Kb) [Save to disk] Biological Unit Coordinates (5jtv.pdb1.gz) 218 Kb Biological Unit Coordinates (5jtv.pdb2.gz) 217 Kb Biological Unit Coordinates (5jtv.pdb3.gz) 217 Kb Biological Unit Coordinates (5jtv.pdb4.gz) 218 Kb Biological Unit Coordinates (5jtv.pdb5.gz) 429 Kb Biological Unit Coordinates (5jtv.pdb6.gz) 851 Kb Biological Unit Coordinates (5jtv.pdb7.gz) 429 Kb CSU: Contacts of Structural Units for 5JTV Structure Factors (762 Kb) Retrieve 5JTV in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5JTV from S2C, [Save to disk] Re-refined 5jtv structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5JTV in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5JTV

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5jtv_G] [5jtv] [5jtv_D] [5jtv_B] [5jtv_E] [5jtv_A] [5jtv_F] [5jtv_H] [5jtv_C] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5JTV: [UBQ ] by SMART

Other resources with information on 5JTV

Community annotation for 5JTV at PDBWiki (http://pdbwiki.org)

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