5JYN Viral Protein date May 14, 2016
title Structure Of The Transmembrane Domain Of Hiv-1 Gp41 In Bicel
authors J.Dev, Q.Fu, D.Park, B.Chen, J.J.Chou
compound source
Molecule: Envelope Glycoprotein Gp160
Chain: A, B, C
Fragment: Gp41 Domain Residues 670-709
Engineered: Yes
Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Env
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_vector: Pmm-Lr6
methodSolution NMR
Primary referenceStructural basis for membrane anchoring of HIV-1 envelope spike., Dev J, Park D, Fu Q, Chen J, Ha HJ, Ghantous F, Herrmann T, Chang W, Liu Z, Frey G, Seaman MS, Chen B, Chou JJ, Science. 2016 Jul 8;353(6295):172-5. doi: 10.1126/science.aaf7066. Epub 2016 Jun , 23. PMID:27338706
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (509 Kb) [Save to disk]
  • Biological Unit Coordinates (5jyn.pdb1.gz) 34 Kb
  • CSU: Contacts of Structural Units for 5JYN
  • Original NMR restraints for 5JYN from PDB
  • Retrieve 5JYN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JYN from S2C, [Save to disk]
  • View 5JYN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5JYN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jyn_B] [5jyn_C] [5jyn_A] [5jyn]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5JYN
  • Community annotation for 5JYN at PDBWiki (http://pdbwiki.org)

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