5JZT Toxin date May 17, 2016
title Cryo-Em Structure Of Aerolysin Pore In Lmng Micelle
authors I.Iacovache, B.Zuber
compound source
Molecule: Aerolysin
Chain: A, B, C, D, E, F, G
Engineered: Yes
 Organism_scientific: Aeromonas Hydrophila
Organism_taxid: 644
Gene: Aera
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 7.40 Å
Gene
Ontology
ChainFunctionProcessComponent
F, A, D, C, G, E, B
  • toxin activity


    • Primary referenceCryo-EM structure of aerolysin variants reveals a novel protein fold and the pore-formation process., Iacovache I, De Carlo S, Cirauqui N, Dal Peraro M, van der Goot FG, Zuber B, Nat Commun. 2016 Jul 13;7:12062. doi: 10.1038/ncomms12062. PMID:27405240
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (427 Kb) [Save to disk]
  • Biological Unit Coordinates (5jzt.pdb1.gz) 423 Kb
  • CSU: Contacts of Structural Units for 5JZT
  • Retrieve 5JZT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5JZT from S2C, [Save to disk]
    • View 5JZT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5JZT
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5jzt_B] [5jzt_C] [5jzt_A] [5jzt_G] [5jzt] [5jzt_D] [5jzt_F] [5jzt_E]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5JZT: [Aerolysin ] by SMART
    • Other resources with information on 5JZT
  • Community annotation for 5JZT at PDBWiki (http://pdbwiki.org)

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