5K58	Dna Binding Protein Dna	date	May 23, 2016
title	Structure Of The K. Pneumonia Slma-Dna Complex Bound To The Of The Cell Division Protein Ftsz
authors	M.Schumacher
compound		source
Molecule: Nucleoid Occlusion Factor Slma Chain: E, F, A, B Fragment: Unp Residues 9-198 Engineered: Yes		Organism_scientific: Escherichia Coli O139:H28 (Strain E243 Etec); Organism_taxid: 331111 Strain: E24377a Etec Gene: Slma, Ece24377a_4142 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Dna (5'-D(Gptpgpapgptpapcptpcpapc)-3' Chain: R, T Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Octapeptide Chain: L, K, N, M Engineered: Yes Other_details: Leu-Asp-Ile-Pro-Ala-Phe-Leu-Arg		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 32	R_factor 0.247 R_Free 0.268
crystal cell	length a length b length c angle alpha angle beta angle gamma 84.800 84.800 161.600 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.77 Å
Gene	ECE24377A
Gene Ontology	Chain Function Process Component F, A, E, B
Primary reference	Structures of the nucleoid occlusion protein SlmA bound to DNA and the C-terminal domain of the cytoskeletal protein FtsZ., Schumacher MA, Zeng W, Proc Natl Acad Sci U S A. 2016 May 3;113(18):4988-93. doi:, 10.1073/pnas.1602327113. Epub 2016 Apr 18. PMID:27091999

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (143 Kb) [Save to disk] Biological Unit Coordinates (5k58.pdb1.gz) 138 Kb CSU: Contacts of Structural Units for 5K58 Structure Factors (274 Kb) Retrieve 5K58 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5K58 from S2C, [Save to disk] Re-refined 5k58 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5K58 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5K58

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5k58_A] [5k58_E] [5k58_T] [5k58] [5k58_B] [5k58_N] [5k58_K] [5k58_M] [5k58_F] [5k58_R] [5k58_L] SWISS-PROT database: Domain organization of by SWISSPFAM

Other resources with information on 5K58

Community annotation for 5K58 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---