5K7K Oxidoreductase date May 26, 2016
title Design And Optimization Of Biaryl Ether Aryl Sulfonamides As Inhibitors Of Nav1.7: Discovery Of Clinical Candidate Pf-05
authors N.Swain, J.Chrencik
compound source
Molecule: Cytochrome P450 2c9
Chain: A
Synonym: (R)-Limonene 6-Monooxygenase,(S)-Limonene 6-Monoox (S)-Limonene 7-Monooxygenase,Cypiic9,Cholesterol 25-Hydroxy Cytochrome P-450mp,Cytochrome P450 Mp-4,Cytochrome P450 Mp- Cytochrome P450 Pb-1,S-Mephenytoin 4-Hydroxylase;
Ec: 1.14.13.80
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cyp2c9, Cyp2c10
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: H 3
R_factor 0.224 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
91.690 91.690 169.880 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand 6RJ, HEM enzyme Oxidoreductase E.C.1.14.13.80 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDiscovery of Clinical Candidate 4-[2-(5-Amino-1H-pyrazol-4-yl)-4-chlorophenoxy]-5-chloro-2-fluoro-N-1,3-thiazol-4 -ylbenzenesulfonamide (PF-05089771): Design and Optimization of Diaryl Ether Aryl Sulfonamides as Selective Inhibitors of NaV1.7., Swain NA, Batchelor D, Beaudoin S, Bechle BM, Bradley PA, Brown AD, Brown B, Butcher KJ, Butt RP, Chapman ML, Denton S, Ellis D, Galan SRG, Gaulier SM, Greener BS, de Groot MJ, Glossop MS, Gurrell IK, Hannam J, Johnson MS, Lin Z, Markworth CJ, Marron BE, Millan DS, Nakagawa S, Pike A, Printzenhoff D, Rawson DJ, Ransley SJ, Reister SM, Sasaki K, Storer RI, Stupple PA, West CW, J Med Chem. 2017 Aug 24;60(16):7029-7042. doi: 10.1021/acs.jmedchem.7b00598. Epub, 2017 Aug 10. PMID:28682065
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (83 Kb) [Save to disk]
  • Biological Unit Coordinates (5k7k.pdb1.gz) 77 Kb
  • LPC: Ligand-Protein Contacts for 5K7K
  • CSU: Contacts of Structural Units for 5K7K
  • Structure Factors (496 Kb)
  • Retrieve 5K7K in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5K7K from S2C, [Save to disk]
  • Re-refined 5k7k structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5K7K in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5K7K
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5k7k_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5K7K
  • Community annotation for 5K7K at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science