5KHX Transferase Transferase Inhibitor date Jun 16, 2016
title Crystal Structure Of Jak1 In Complex With Pf-4950736
authors S.Han, N.L.Caspers
compound source
Molecule: Tyrosine-Protein Kinase Jak1
Chain: A
Synonym: Janus Kinase 1,Jak-1
Ec: 2.7.10.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jak1, Jak1a, Jak1b
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 2 2 21
R_factor 0.170 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.250 88.300 146.840 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
ligand 6TE, PTR enzyme Transferase E.C.2.7.10.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDevelopment of a high-throughput crystal structure-determination platform for JAK1 using a novel metal-chelator soaking system., Caspers NL, Han S, Rajamohan F, Hoth LR, Geoghegan KF, Subashi TA, Vazquez ML, Kaila N, Cronin CN, Johnson E, Kurumbail RG, Acta Crystallogr F Struct Biol Commun. 2016 Nov 1;72(Pt 11):840-845. doi:, 10.1107/S2053230X16016356. Epub 2016 Oct 27. PMID:27827355
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5khx.pdb1.gz) 100 Kb
  • LPC: Ligand-Protein Contacts for 5KHX
  • CSU: Contacts of Structural Units for 5KHX
  • Structure Factors (762 Kb)
  • Retrieve 5KHX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KHX from S2C, [Save to disk]
  • Re-refined 5khx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KHX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KHX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5khx] [5khx_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KHX: [TyrKc ] by SMART
  • Other resources with information on 5KHX
  • Community annotation for 5KHX at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science