5KIT Transferase Transferase Inhibitor date Jun 17, 2016
title Crystal Structure Of Nicotinamide Phosphoribosyltransferase Complex With Inhibitors 37
authors D.Li, W.Wang
compound source
Molecule: Nicotinamide Phosphoribosyltransferase
Chain: A, B
Synonym: Nampt,Pre-B-Cell Colony-Enhancing Factor 1,Pre-B C Enhancing Factor,Visfatin;
Ec: 2.4.2.12
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nampt, Pbef, Pbef1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.137 R_Free 0.180
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.748 106.589 83.320 90.00 96.65 90.00
method X-Ray Diffractionresolution 1.60 Å
ligand 6TA, EDO, PO4 enzyme Transferase E.C.2.4.2.12 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (356 Kb) [Save to disk]
  • Biological Unit Coordinates (5kit.pdb1.gz) 350 Kb
  • LPC: Ligand-Protein Contacts for 5KIT
  • CSU: Contacts of Structural Units for 5KIT
  • Structure Factors (2581 Kb)
  • Retrieve 5KIT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KIT from S2C, [Save to disk]
  • Re-refined 5kit structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KIT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KIT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kit_A] [5kit] [5kit_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KIT
  • Community annotation for 5KIT at PDBWiki (http://pdbwiki.org)

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