5KJH Transferase date Jun 20, 2016
title Crystal Structure Of An Active Polycomb Repressive Complex 2 Stimulated State
authors L.Jiao, X.Liu
compound source
Molecule: Putative Polycomb Protein Eed
Chain: A
Engineered: Yes
Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719);
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Ctht_0029920
Expression_system: Saccharomyces Cerevisiae S288c
Expression_system_taxid: 559292

Molecule: Putative Uncharacterized Protein,Zinc Finger Doma Containing Protein;
Chain: B
Engineered: Yes

Organism_scientific: Chaetomium Thermophilum (Strain Dsm 14 144.50 Imi 039719), Chaetomium Thermophilum;
Organism_taxid: 759272
Strain: Dsm 1495 Cbs 144.50 Imi 039719
Gene: Ctht_0053230, Ctht_0006210
Expression_system: Saccharomyces Cerevisiae S288c
Expression_system_taxid: 559292

Molecule: Peptide H3k27me3
Chain: D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.168 R_Free 0.213
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.554 74.612 128.508 90.00 107.70 90.00
method X-Ray Diffractionresolution 2.27 Å
ligand M3L, SAH, ZN enzyme
note 5KJH supersedes 5CH1
Gene CTHT ; CTHT
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (463 Kb) [Save to disk]
  • Biological Unit Coordinates (5kjh.pdb1.gz) 455 Kb
  • LPC: Ligand-Protein Contacts for 5KJH
  • CSU: Contacts of Structural Units for 5KJH
  • Structure Factors (2918 Kb)
  • Retrieve 5KJH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KJH from S2C, [Save to disk]
  • Re-refined 5kjh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KJH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KJH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kjh_B] [5kjh_A] [5kjh_D] [5kjh]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KJH
  • Community annotation for 5KJH at PDBWiki (http://pdbwiki.org)

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