5KK3 Protein Fibril date Jun 20, 2016
title Atomic Resolution Structure Of Monomorphic Ab42 Amyloid Fibr
authors M.T.Colvin, R.Silvers, Q.Zhe Ni, T.V.Can, I.Sergeyev, M.Rosay, K.J B.Michael, J.Wall, S.Linse, R.G.Griffin
compound source
Molecule: Beta-Amyloid Protein 42
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Fragment: Residues 672-713
Synonym: Amyloid Beta A4 Protein, Abpp,Appi,App,Alzheimer D Amyloid Protein,Amyloid Precursor Protein,Beta-Amyloid Prec Protein,Cerebral Vascular Amyloid Peptide,Cvap,Prea4,Protea II,Pn-II;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolid-State NMR
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceAtomic Resolution Structure of Monomorphic Abeta42 Amyloid Fibrils., Colvin MT, Silvers R, Ni QZ, Can TV, Sergeyev IV, Rosay M, Donovan KJ, Michael B, Wall JS, Linse S, Griffin RG, J Am Chem Soc. 2016 Jun 29. PMID:27355699
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1450 Kb) [Save to disk]
  • Biological Unit Coordinates (5kk3.pdb1.gz) 146 Kb
  • CSU: Contacts of Structural Units for 5KK3
  • Original NMR restraints for 5KK3 from PDB
  • Retrieve 5KK3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KK3 from S2C, [Save to disk]
  • View 5KK3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KK3
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kk3_G] [5kk3_K] [5kk3_J] [5kk3] [5kk3_F] [5kk3_L] [5kk3_P] [5kk3_N] [5kk3_R] [5kk3_M] [5kk3_A] [5kk3_D] [5kk3_C] [5kk3_B] [5kk3_O] [5kk3_E] [5kk3_I] [5kk3_H] [5kk3_Q]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KK3
  • Community annotation for 5KK3 at PDBWiki (http://pdbwiki.org)

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