5KL3	Transcription Dna	date	Jun 23, 2016
title	Wilms Tumor Protein (Wt1) Znf2-4 Q369h In Complex With Dna
authors	H.Hashimoto, X.Cheng
compound		source
Molecule: Wilms Tumor Protein Chain: A Synonym: Wt33 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Variant: -Kts Gene: Wt1 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Bl21 (De3) Ril-Codon Plus Expression_system_vector_type: Pgex-6p-1 Expression_system_plasmid: Pxc1305
Molecule: Dna (5'-D(Apgpcpgptpgpgpgpapgpt)-3') Chain: B Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpapcptpcpcpcpapcpgpc)-3') Chain: C Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: C 1 2 1	R_factor 0.162 R_Free 0.182
crystal cell	length a length b length c angle alpha angle beta angle gamma 75.223 66.069 35.646 90.00 91.75 90.00
method	X-Ray Diffraction	resolution	1.45 Å
ligand	EDO, ZN	enzyme
Primary reference	Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications., Hashimoto H, Zhang X, Zheng Y, Wilson GG, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw766. PMID:27596598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (5kl3.pdb1.gz) 73 Kb LPC: Ligand-Protein Contacts for 5KL3 CSU: Contacts of Structural Units for 5KL3 Structure Factors (441 Kb) Retrieve 5KL3 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KL3 from S2C, [Save to disk] Re-refined 5kl3 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KL3 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KL3

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kl3] [5kl3_C] [5kl3_B] [5kl3_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KL3: [ZnF_C2H2 ] by SMART

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