5KL4	Transcription Dna	date	Jun 23, 2016
title	Wilms Tumor Protein (Wt1) Znf2-4 Q369h In Complex With Formy
authors	H.Hashimoto, X.Cheng
compound		source
Molecule: Wilms Tumor Protein Chain: A, D Fragment: Unp Residues 333-420 Synonym: Wt33 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Variant: -Kts Gene: Wt1 Expression_system: Escherichia Coli Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Ril Codon Plus Expression_system_vector_type: Pgex-6p-1 Expression_system_plasmid: Pxc1305
Molecule: Dna (5'-D(Apgpcpgptpgpgpgp(5fc)Pgpt)-3 Chain: B, E Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
Molecule: Dna (5'-D(Tpap(5cm)Pgpcpcpcpapcpgpc)-3 Chain: C, F Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630
symmetry	Space Group: P 1	R_factor 0.217 R_Free 0.246
crystal cell	length a length b length c angle alpha angle beta angle gamma 35.766 43.853 54.808 81.95 88.57 88.51
method	X-Ray Diffraction	resolution	1.78 Å
ligand	5CM, 5FC, CA, EDO, NA, ZN	enzyme
Primary reference	Denys-Drash syndrome associated WT1 glutamine 369 mutants have altered sequence-preferences and altered responses to epigenetic modifications., Hashimoto H, Zhang X, Zheng Y, Wilson GG, Cheng X, Nucleic Acids Res. 2016 Sep 4. pii: gkw766. PMID:27596598

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (150 Kb) [Save to disk] Biological Unit Coordinates (5kl4.pdb1.gz) 72 Kb Biological Unit Coordinates (5kl4.pdb2.gz) 71 Kb LPC: Ligand-Protein Contacts for 5KL4 CSU: Contacts of Structural Units for 5KL4 Structure Factors (477 Kb) Retrieve 5KL4 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KL4 from S2C, [Save to disk] Re-refined 5kl4 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KL4 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KL4

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kl4_A] [5kl4_F] [5kl4_D] [5kl4_E] [5kl4_C] [5kl4] [5kl4_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KL4: [ZnF_C2H2 ] by SMART

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