5KLY Hydrolase date Jun 26, 2016
title Human Histidine Triad Nucleotide Binding Protein 1 (Hhint1) Mutant Adenosine Nucleoside Phosphoramidate Substrate Compl
authors K.M.Maize, B.C.Finzel
compound source
Molecule: Histidine Triad Nucleotide-Binding Protein 1
Chain: A, B
Synonym: Adenosine 5'-Monophosphoramidase
Ec: 3.-.-.-
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hint1, Hint
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Rosetta 2 Plyss
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmcsg7
symmetry Space Group: C 1 2 1
R_factor 0.149 R_Free 0.171
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.865 46.502 64.063 90.00 94.80 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand 6UR, CL, PEG enzyme Hydrolase E.C.3 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceA Crystal Structure-Based Guide to the Design of Human Histidine Triad Nucleotide Binding Protein 1 (hHint1) Activated ProTides., Maize KM, Shah R, Strom A, Kumarapperuma SC, Zhou AL, Wagner CR, Finzel BC, Mol Pharm. 2017 Oct 2. doi: 10.1021/acs.molpharmaceut.7b00664. PMID:28968488
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (5kly.pdb1.gz) 43 Kb
  • LPC: Ligand-Protein Contacts for 5KLY
  • CSU: Contacts of Structural Units for 5KLY
  • Structure Factors (1119 Kb)
  • Retrieve 5KLY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KLY from S2C, [Save to disk]
  • Re-refined 5kly structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KLY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KLY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kly_A] [5kly_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KLY
  • Community annotation for 5KLY at PDBWiki (http://pdbwiki.org)

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