5KO2	Hydrolase	date	Jun 29, 2016
title	Mouse Pgp 34 Linker Deleted Mutant Hg Derivative
authors	D.Xia, L.Esser, F.Zhou
compound		source
Molecule: Multidrug Resistance Protein 1a Chain: A, B Synonym: Atp-Binding Cassette Sub-Family B Member 1a,Mdr1a, Resistance Protein 3,P-Glycoprotein 3; Ec: 3.6.3.44 Engineered: Yes		Organism_scientific: Mus Musculus Organism_common: Mouse Organism_taxid: 10090 Gene: Abcb1a, Abcb4, Mdr1a, Mdr3, Pgy-3, Pgy3 Expression_system: Komagataella Pastoris Gs115 Expression_system_taxid: 644223
symmetry	Space Group: P 21 21 21	R_factor 0.243 R_Free 0.285
crystal cell	length a length b length c angle alpha angle beta angle gamma 98.185 114.741 375.431 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.30 Å
ligand	HG	enzyme	Hydrolase E.C.3.6.3.44 BRENDA
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structures of the Multidrug Transporter P-glycoprotein Reveal Asymmetric ATP Binding and the Mechanism of Polyspecificity., Esser L, Zhou F, Pluchino KM, Shiloach J, Ma J, Tang WK, Gutierrez C, Zhang A, Shukla S, Madigan JP, Zhou T, Kwong PD, Ambudkar SV, Gottesman MM, Xia D, J Biol Chem. 2016 Nov 18. pii: jbc.M116.755884. PMID:27864369

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1154 Kb) [Save to disk] Biological Unit Coordinates (5ko2.pdb1.gz) 576 Kb Biological Unit Coordinates (5ko2.pdb2.gz) 575 Kb LPC: Ligand-Protein Contacts for 5KO2 CSU: Contacts of Structural Units for 5KO2 Structure Factors (656 Kb) Retrieve 5KO2 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KO2 from S2C, [Save to disk] Re-refined 5ko2 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KO2 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KO2

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ko2_B] [5ko2_A] [5ko2] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KO2: [AAA ] by SMART

Other resources with information on 5KO2

Community annotation for 5KO2 at PDBWiki (http://pdbwiki.org)

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