5KPI Hydrolase date Jul 04, 2016
title Mouse Native Pgp
authors D.Xia, L.Esser, F.Zhou
compound source
Molecule: Multidrug Resistance Protein 1a
Chain: A, B
Synonym: Atp-Binding Cassette Sub-Family B Member 1a,Mdr1a, Resistance Protein 3,P-Glycoprotein 3;
Ec: 3.6.3.44
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Abcb1a, Abcb4, Mdr1a, Mdr3, Pgy-3, Pgy3
Expression_system: Komagataella Pastoris Gs115
Expression_system_taxid: 644223
symmetry Space Group: P 21 21 21
R_factor 0.258 R_Free 0.303
crystal
cell
length a length b length c angle alpha angle beta angle gamma
100.607 119.535 383.887 90.00 90.00 90.00
method X-Ray Diffractionresolution 4.01 Å
ligand
enzyme Hydrolase E.C.3.6.3.44 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceStructures of the Multidrug Transporter P-glycoprotein Reveal Asymmetric ATP Binding and the Mechanism of Polyspecificity., Esser L, Zhou F, Pluchino KM, Shiloach J, Ma J, Tang WK, Gutierrez C, Zhang A, Shukla S, Madigan JP, Zhou T, Kwong PD, Ambudkar SV, Gottesman MM, Xia D, J Biol Chem. 2016 Nov 18. pii: jbc.M116.755884. PMID:27864369
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1168 Kb) [Save to disk]
  • Biological Unit Coordinates (5kpi.pdb1.gz) 583 Kb
  • Biological Unit Coordinates (5kpi.pdb2.gz) 583 Kb
  • CSU: Contacts of Structural Units for 5KPI
  • Structure Factors (625 Kb)
  • Retrieve 5KPI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KPI from S2C, [Save to disk]
  • Re-refined 5kpi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KPI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KPI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kpi] [5kpi_A] [5kpi_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KPI: [AAA ] by SMART
  • Other resources with information on 5KPI
  • Community annotation for 5KPI at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science