5KQF Hydrolase Hydrolase Inhibitor date Jul 06, 2016
title 4~{S},6~{S})-4-[2,4-Bis(Fluoranyl)Phenyl]-4-Methyl-6-Pyrimi 5,6-Dihydro-1,3-Thiazin-2-Amine (Compound 12) Bound To Bace
authors H.A.Lewis, Y.J.Wu, R.Rajamani, L.A.Thompson
compound source
Molecule: Beta-Secretase 1
Chain: A
Fragment: Unp Residues 14-454
Synonym: Aspartyl Protease 2, Asp 2, Beta-Site Amyloid Prec Protein Cleaving Enzyme 1, Beta-Site App Cleaving Enzyme 1, 2, Membrane-Associated Aspartic Protease 2;
Ec: 3.4.23.46
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bace1, Bace, Kiaa1149
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 61 2 2
R_factor 0.221 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
102.158 102.158 169.780 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.98 Å
ligand 6WD enzyme Hydrolase E.C.3.4.23.46 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (68 Kb) [Save to disk]
  • Biological Unit Coordinates (5kqf.pdb1.gz) 63 Kb
  • LPC: Ligand-Protein Contacts for 5KQF
  • CSU: Contacts of Structural Units for 5KQF
  • Structure Factors (788 Kb)
  • Retrieve 5KQF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KQF from S2C, [Save to disk]
  • Re-refined 5kqf structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KQF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KQF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kqf] [5kqf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KQF
  • Community annotation for 5KQF at PDBWiki (http://pdbwiki.org)

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