5KTE	Transport Protein Immune System	date	Jul 11, 2016
title	Crystal Structure Of Deinococcus Radiodurans Mnth, An Nramp- Transition Metal Transporter
authors	L.B.Bane, R.Gaudet, W.A.Weihofen, A.Singharoy
compound		source
Molecule: Divalent Metal Cation Transporter Mnth Chain: A Fragment: Unp Residues 26-436 Engineered: Yes Mutation: Yes		Organism_scientific: Deinococcus Radiodurans Organism_taxid: 243230 Strain: Atcc 13939 Dsm 20539 Jcm 16871 Lmg 4051 Nbr Ncimb 9279 R1 Vkm B-1422; Gene: Mnth, Dr_1709 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: C41(De3) Expression_system_vector_type: Plasmid Expression_system_plasmid: Pet21
Molecule: Fab Heavy Chain Chain: H Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_cell_line: Hybridoma Cell Line
Molecule: Fab Light Chain Chain: L Engineered: Yes		Organism_scientific: Mus Musculus Organism_taxid: 10090 Expression_system: Mus Musculus Expression_system_taxid: 10090 Expression_system_cell_line: Hybridoma Cell Line
symmetry	Space Group: I 2 2 2	R_factor 0.268 R_Free 0.313
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.131 132.077 220.995 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.94 Å
ligand	OS	enzyme
Gene	DR
Gene Ontology	Chain Function Process Component A manganese ion transmembrane ... cadmium ion transmembrane tr... symporter activity
Primary reference	Crystal Structure and Conformational Change Mechanism of a Bacterial Nramp-Family Divalent Metal Transporter., Bozzi AT, Bane LB, Weihofen WA, Singharoy A, Guillen ER, Ploegh HL, Schulten K, Gaudet R, Structure. 2016 Dec 6;24(12):2102-2114. doi: 10.1016/j.str.2016.09.017. Epub 2016, Nov 10. PMID:27839948

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (247 Kb) [Save to disk] Biological Unit Coordinates (5kte.pdb1.gz) 239 Kb LPC: Ligand-Protein Contacts for 5KTE CSU: Contacts of Structural Units for 5KTE Structure Factors (223 Kb) Retrieve 5KTE in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KTE from S2C, [Save to disk] Re-refined 5kte structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KTE in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KTE

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Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kte_L] [5kte] [5kte_H] [5kte_A] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5KTE: [IG_like] [IGv ] by SMART

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