5KTF Signaling Protein date Jul 11, 2016
title Structure Of The C-Terminal Transmembrane Domain Of Scavenge Bi (Sr-Bi)
authors A.C.Chadwick, F.C.Peterson, B.F.Volkman, D.Sahoo
compound source
Molecule: Scavenger Receptor Class B Member 1
Chain: A
Synonym: Srb1,Sr-Bi
Engineered: Yes
 Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Scarb1, Srb1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Bl21-[Prep4]
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pqe30-Smt
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceNMR Structure of the C-Terminal Transmembrane Domain of the HDL Receptor, SR-BI, and a Functionally Relevant Leucine Zipper Motif., Chadwick AC, Jensen DR, Hanson PJ, Lange PT, Proudfoot SC, Peterson FC, Volkman BF, Sahoo D, Structure. 2017 Mar 7;25(3):446-457. doi: 10.1016/j.str.2017.01.001. Epub 2017, Feb 2. PMID:28162952
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (448 Kb) [Save to disk]
  • Biological Unit Coordinates (5ktf.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 5KTF
  • Original NMR restraints for 5KTF from PDB
  • Retrieve 5KTF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KTF from S2C, [Save to disk]
    • View 5KTF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KTF
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ktf_A] [5ktf]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5KTF
  • Community annotation for 5KTF at PDBWiki (http://pdbwiki.org)

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science