5KUF Signaling Protein date Jul 13, 2016
title Gluk2em With 2s,4r-4-Methylglutamate
authors J.R.Meyerson, S.Chittori, A.Merk, P.Rao, T.H.Han, M.Serpe, M.L.May S.Subramaniam
compound source
Molecule: Glutamate Receptor Ionotropic, Kainate 2
Chain: A, B, C, D
Synonym: Gluk2, Glutamate Receptor 6, Glur6
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Grik2, Glur6
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108
Expression_system_vector_type: Baculovirus
Expression_system_plasmid: Pfastbac1
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 3.80 Å
ligand SYM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B
  • ionotropic glutamate recepto...
  • ion channel activity
  • ligand-gated ion channel act...
  • kainate selective glutamate ...
  • ligand-gated ion channel act...


  • Primary referenceStructural basis of kainate subtype glutamate receptor desensitization., Meyerson JR, Chittori S, Merk A, Rao P, Han TH, Serpe M, Mayer ML, Subramaniam S, Nature. 2016 Aug 31. doi: 10.1038/nature19352. PMID:27580033
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (414 Kb) [Save to disk]
  • Biological Unit Coordinates (5kuf.pdb1.gz) 407 Kb
  • LPC: Ligand-Protein Contacts for 5KUF
  • CSU: Contacts of Structural Units for 5KUF
  • Retrieve 5KUF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KUF from S2C, [Save to disk]
  • View 5KUF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KUF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kuf_C] [5kuf_B] [5kuf] [5kuf_D] [5kuf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5KUF: [Lig_chan-Glu_bd] [PBPe ] by SMART
  • Other resources with information on 5KUF
  • Community annotation for 5KUF at PDBWiki (http://pdbwiki.org)

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