5KUP	Transferase Transferase Inhibitor	date	Jul 13, 2016
title	Bruton'S Tyrosine Kinase (Btk) With Pyridazinone Compound 9
authors	C.Eigenbrot, C.Yu
compound		source
Molecule: Tyrosine-Protein Kinase Btk Chain: A Synonym: Agammaglobulinemia Tyrosine Kinase,Atk,B-Cell Prog Kinase,Bpk,Bruton Tyrosine Kinase; Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Btk, Agmx1, Atk, Bpk Expression_system: Spodoptera Frugiperda Expression_system_taxid: 7108
symmetry	Space Group: P 61	R_factor 0.166 R_Free 0.177
crystal cell	length a length b length c angle alpha angle beta angle gamma 108.373 108.373 42.453 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.39 Å
ligand	6XL, GOL, PG0, SO4	enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Battling Btk Mutants With Noncovalent Inhibitors That Overcome Cys481 and Thr474 Mutations., Johnson AR, Kohli PB, Katewa A, Gogol E, Belmont LD, Choy R, Penuel E, Burton L, Eigenbrot C, Yu C, Ortwine DF, Bowman K, Franke Y, Tam C, Estevez A, Mortara K, Wu J, Li H, Lin M, Bergeron P, Crawford JJ, Young WB, ACS Chem Biol. 2016 Sep 7. PMID:27571029

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk] Biological Unit Coordinates (5kup.pdb1.gz) 53 Kb LPC: Ligand-Protein Contacts for 5KUP CSU: Contacts of Structural Units for 5KUP Structure Factors (1156 Kb) Retrieve 5KUP in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5KUP from S2C, [Save to disk] Re-refined 5kup structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5KUP in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5KUP

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5kup_A] [5kup] SWISS-PROT database: Domain organization of by SWISSPFAM Domain found in 5KUP: [TyrKc ] by SMART

Other resources with information on 5KUP

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