5KVI Oxidoreductase date Jul 14, 2016
title Crystal Structure Of Monomeric Human Apoptosis-Inducing Fact E413ar422ar430a Mutations
authors C.A.Brosey, J.Nix, T.Ellenberger, J.A.Tainer
compound source
Molecule: Apoptosis-Inducing Factor 1, Mitochondrial
Chain: A
Synonym: Programmed Cell Death Protein 8
Ec: 1.1.1.-
Engineered: Yes
Mutation: Yes
Other_details: Expressed As Aif(78-613). Residues L614-Q619 From Prescission Protease Cleavage.
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aifm1, Aif, Pdcd8
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Rosetta2 (De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet24b
symmetry Space Group: P 21 21 21
R_factor 0.157 R_Free 0.194
crystal
cell
length a length b length c angle alpha angle beta angle gamma
64.623 81.802 108.323 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand EPE, FAD, GOL enzyme Oxidoreductase E.C.1.1.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceDefining NADH-Driven Allostery Regulating Apoptosis-Inducing Factor., Brosey CA, Ho C, Long WZ, Singh S, Burnett K, Hura GL, Nix JC, Bowman GR, Ellenberger T, Tainer JA, Structure. 2016 Dec 6;24(12):2067-2079. doi: 10.1016/j.str.2016.09.012. Epub 2016, Nov 3. PMID:27818101
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (239 Kb) [Save to disk]
  • Biological Unit Coordinates (5kvi.pdb1.gz) 231 Kb
  • LPC: Ligand-Protein Contacts for 5KVI
  • CSU: Contacts of Structural Units for 5KVI
  • Structure Factors (877 Kb)
  • Retrieve 5KVI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KVI from S2C, [Save to disk]
  • Re-refined 5kvi structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5KVI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KVI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kvi] [5kvi_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KVI: [AIF_C ] by SMART
  • Other resources with information on 5KVI
  • Community annotation for 5KVI at PDBWiki (http://pdbwiki.org)

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