5KX2 De Novo Protein date Jul 19, 2016
title Nmr Solution Structure Of Designed Peptide Nc_cee_d1
authors P.J.Harvey, D.J.Craik
compound source
Molecule: Designed Peptide Nc_cee_d1
Chain: A
Engineered: Yes
Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR
ligand DPR enzyme
Primary referenceAccurate de novo design of hyperstable constrained peptides., Bhardwaj G, Mulligan VK, Bahl CD, Gilmore JM, Harvey PJ, Cheneval O, Buchko GW, Pulavarti SV, Kaas Q, Eletsky A, Huang PS, Johnsen WA, Greisen PJ, Rocklin GJ, Song Y, Linsky TW, Watkins A, Rettie SA, Xu X, Carter LP, Bonneau R, Olson JM, Coutsias E, Correnti CE, Szyperski T, Craik DJ, Baker D, Nature. 2016 Sep 14. doi: 10.1038/nature19791. PMID:27626386
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (74 Kb) [Save to disk]
  • Biological Unit Coordinates (5kx2.pdb1.gz) 5 Kb
  • LPC: Ligand-Protein Contacts for 5KX2
  • CSU: Contacts of Structural Units for 5KX2
  • Original NMR restraints for 5KX2 from PDB
  • Retrieve 5KX2 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KX2 from S2C, [Save to disk]
  • View 5KX2 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KX2
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kx2_A] [5kx2]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5KX2
  • Community annotation for 5KX2 at PDBWiki (http://pdbwiki.org)

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