5KXA Hydrolase Hydrolase Inhibitor date Jul 20, 2016
title Selective Inhibition Of Autotaxin Is Effective In Mouse Mode Liver Fibrosis
authors A.J.Stein, G.Bain, J.H.Hutchinson, J.F.Evans
compound source
Molecule: Ectonucleotide Pyrophosphatasephosphodiesterase Member 2;
Chain: A
Synonym: E-Npp 2,Autotaxin,Extracellular Lysophospholipase
Ec: 3.1.4.39
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Enpp2, Atx, Pdnp2
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: P 1
R_factor 0.173 R_Free 0.247
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.100 55.506 70.075 71.56 79.75 81.09
method X-Ray Diffractionresolution 2.59 Å
ligand 6Y7, CA, NAG, PO4, ZN enzyme Hydrolase E.C.3.1.4.39 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSelective Inhibition of Autotaxin Is Efficacious in Mouse Models of Liver Fibrosis., Bain G, Shannon KE, Huang F, Darlington J, Goulet L, Prodanovich P, Ma GL, Santini AM, Stein AJ, Lonergan D, King CD, Calderon I, Lai A, Hutchinson JH, Evans JF, J Pharmacol Exp Ther. 2017 Jan;360(1):1-13. Epub 2016 Oct 17. PMID:27754931
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (126 Kb) [Save to disk]
  • Biological Unit Coordinates (5kxa.pdb1.gz) 120 Kb
  • LPC: Ligand-Protein Contacts for 5KXA
  • CSU: Contacts of Structural Units for 5KXA
  • Structure Factors (479 Kb)
  • Retrieve 5KXA in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KXA from S2C, [Save to disk]
  • Re-refined 5kxa structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5KXA in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5KXA
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kxa_A] [5kxa]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5KXA: [Endonuclease_NS] [NUC] [SO ] by SMART
    • Other resources with information on 5KXA
  • Community annotation for 5KXA at PDBWiki (http://pdbwiki.org)

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