5KZ5 Transferase Oxidoreductase date Jul 22, 2016
title Architecture Of The Human Mitochondrial Iron-Sulfur Cluster Machinery: The Complex Formed By The Iron Donor, The Sulfur And The Scaffold
authors O.Gakh, W.Ranatunga, D.Y.Smith, E.C.Ahlgren, S.Al-Karadaghi, J.R. G.Isaya
compound source
Molecule: Cysteine Desulfurase, Mitochondrial
Chain: 1, 2, 3, 4, M, N, O, P, Q, R, S, T
Synonym: Nfs1
Ec: 2.8.1.7
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Nfs1, Nifs, Hussy-08
Expression_system: Escherichia Coli #1h766
Expression_system_taxid: 1354003

Molecule: Frataxin, Mitochondrial
Chain: A, B, C, D, E, F, G, H, I, J, K, L
Synonym: Friedreich Ataxia Protein, Fxn
Ec: 1.16.3.1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Fxn, Frda, X25
Expression_system: Escherichia Coli #1h766
Expression_system_taxid: 1354003

Molecule: Iron-Sulfur Cluster Assembly Enzyme Iscu, Mitocho
Chain: a, b, c, d, e, f, g, h, I, j, k, l
Synonym: Nifu-Like N-Terminal Domain-Containing Protein, Ni Protein, Iron Sulfur Cluster Scaffold Protein;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Iscu, Nifun
Expression_system: Escherichia Coli #1h766
Expression_system_taxid: 1354003
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 14.30 Å
ligand
enzyme Transferase E.C.2.8.1.7 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
K, E, J, B, H, D, I, G, F, C, L, A


S, T, N, 2, 1, Q, M, O, 3, P, 4, R


a, d, j, k, g, e, c, b, h, f, i, l


Primary referenceArchitecture of the Human Mitochondrial Iron-Sulfur Cluster Assembly Machinery., Gakh O, Ranatunga W, Smith DY 4th, Ahlgren EC, Al-Karadaghi S, Thompson JR, Isaya G, J Biol Chem. 2016 Aug 12. pii: jbc.M116.738542. PMID:27519411
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1079 Kb) [Save to disk]
  • Biological Unit Coordinates (5kz5.pdb1.gz) 1074 Kb
  • CSU: Contacts of Structural Units for 5KZ5
  • Retrieve 5KZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5KZ5 from S2C, [Save to disk]
  • View 5KZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5KZ5
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5kz5_g] [5kz5_A] [5kz5_f] [5kz5_h] [5kz5_S] [5kz5] [5kz5_1] [5kz5_K] [5kz5_N] [5kz5_G] [5kz5_j] [5kz5_d] [5kz5_D] [5kz5_P] [5kz5_F] [5kz5_4] [5kz5_k] [5kz5_c] [5kz5_M] [5kz5_T] [5kz5_C] [5kz5_O] [5kz5_I] [5kz5_a] [5kz5_3] [5kz5_E] [5kz5_e] [5kz5_b] [5kz5_H] [5kz5_i] [5kz5_Q] [5kz5_l] [5kz5_L] [5kz5_R] [5kz5_2] [5kz5_B] [5kz5_J]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5KZ5: [Frataxin_Cyay ] by SMART
  • Other resources with information on 5KZ5
  • Community annotation for 5KZ5 at PDBWiki (http://pdbwiki.org)

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