5L04	Transferase Transferase Inhibitor	date	Jul 26, 2016
title	Structure Of Interferon Lambda 1 Receptor With Human Kinase
authors	J.Lubkowski, A.Wlodawer, D.Zhang
compound		source
Molecule: Tyrosine-Protein Kinase Jak1 Chain: A Fragment: Unp Residues 31-577 Synonym: Janus Kinase 1,Jak-1 Ec: 2.7.10.2 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Jak1, Jak1a, Jak1b Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Rosetta 2 (De3) Expression_system_plasmid: Pet-32a(+)
Molecule: Interferon Lambda Receptor 1 Chain: B Fragment: Unp Residues 260-307 Synonym: Ifn-Lambda-R1,Cytokine Receptor Class-II Member 12 Receptor Family 2 Member 12,Crf2-12,Interleukin-28 Receptor Alpha,Il-28ra,Likely Interleukin Or Cytokine Receptor 2,Lic Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Ifnlr1, Il28ra, Licr2 Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_cell_line: Rosetta 2 (De3) Expression_system_plasmid: Pet-32a(+)
symmetry	Space Group: C 1 2 1	R_factor 0.169 R_Free 0.230
crystal cell	length a length b length c angle alpha angle beta angle gamma 165.700 53.800 87.390 90.00 114.72 90.00
method	X-Ray Diffraction	resolution	2.10 Å
ligand		enzyme	Transferase E.C.2.7.10.2 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal Structure of a Complex of the Intracellular Domain of Interferon lambda Receptor 1 (IFNLR1) and the FERM/SH2 Domains of Human JAK1., Zhang D, Wlodawer A, Lubkowski J, J Mol Biol. 2016 Nov 20;428(23):4651-4668. doi: 10.1016/j.jmb.2016.10.005. Epub, 2016 Oct 7. PMID:27725180

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (90 Kb) [Save to disk] Biological Unit Coordinates (5l04.pdb1.gz) 84 Kb CSU: Contacts of Structural Units for 5L04 Structure Factors (423 Kb) Retrieve 5L04 in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5L04 from S2C, [Save to disk] Re-refined 5l04 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5L04 in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5L04

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5l04] [5l04_A] [5l04_B] SWISS-PROT database: Domain organization of by SWISSPFAM Domains found in 5L04: [B41] [SH2 ] by SMART

Other resources with information on 5L04

Community annotation for 5L04 at PDBWiki (http://pdbwiki.org)

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---