5L08 Apoptosis date Jul 26, 2016
title Cryo-Em Structure Of Casp-8 Tded Filament
authors T.M.Fu, Y.Li, A.Lu, H.Wu
compound source
Molecule: Caspase-8
Chain: A, B, C, D, E, F, G, H, I
Synonym: Casp-8, Apoptotic Cysteine Protease, Apoptotic Pro 5, Cap4, Fadd-Homologous Iceced-3-Like Protease, Fadd-Like Flice, Ice-Like Apoptotic Protease 5, Mort1-Associated Ced- Mach;
Ec: 3.4.22.61
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Casp8, Mch5
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.60 Å
ligand
enzyme Hydrolase E.C.3.4.22.61 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, I, G


Primary referenceCryo-EM Structure of Caspase-8 Tandem DED Filament Reveals Assembly and Regulation Mechanisms of the Death-Inducing Signaling Complex., Fu TM, Li Y, Lu A, Li Z, Vajjhala PR, Cruz AC, Srivastava DB, DiMaio F, Penczek PA, Siegel RM, Stacey KJ, Egelman EH, Wu H, Mol Cell. 2016 Oct 20;64(2):236-250. doi: 10.1016/j.molcel.2016.09.009. Epub 2016, Oct 13. PMID:27746017
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (262 Kb) [Save to disk]
  • Biological Unit Coordinates (5l08.pdb1.gz) 259 Kb
  • CSU: Contacts of Structural Units for 5L08
  • Retrieve 5L08 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L08 from S2C, [Save to disk]
  • View 5L08 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L08
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l08_H] [5l08_G] [5l08_F] [5l08_C] [5l08_A] [5l08_D] [5l08] [5l08_B] [5l08_E] [5l08_I]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domain found in 5L08: [DED ] by SMART
  • Other resources with information on 5L08
  • Community annotation for 5L08 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science