5L0P De Novo Protein date Jul 27, 2016
title Symmetry-Based Assembly Of A Two-Dimensional Protein Lattice
authors S.Faham
compound source
Molecule: Transcription Factor Etv6, Transcription Factor E Transcription Factor Etv6, Ferric Uptake Regulation Protein
Chain: A
Fragment: 3 X Telsam (Unp Residues 47-124) + Fur (Unp Resid With Connecting Linkers;
Synonym: Ets Translocation Variant 6, Ets-Related Protein T Ferric Uptake Regulator;
Engineered: Yes
Organism_scientific: Homo Sapiens, Klebsiella Pneumoniae
Organism_common: Human
Organism_taxid: 9606, 573
Gene: Etv6, Tel, Tel1, Fur
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.198 R_Free 0.236
crystal
cell
length a length b length c angle alpha angle beta angle gamma
131.313 54.833 88.480 90.00 128.47 90.00
method X-Ray Diffractionresolution 2.30 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSymmetry based assembly of a 2 dimensional protein lattice., Poulos S, Agah S, Jallah N, Faham S, PLoS One. 2017 Apr 18;12(4):e0174485. doi: 10.1371/journal.pone.0174485., eCollection 2017. PMID:28419162
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (58 Kb) [Save to disk]
  • Biological Unit Coordinates (5l0p.pdb1.gz) 105 Kb
  • CSU: Contacts of Structural Units for 5L0P
  • Structure Factors (463 Kb)
  • Retrieve 5L0P in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L0P from S2C, [Save to disk]
  • Re-refined 5l0p structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L0P in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L0P
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l0p] [5l0p_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5L0P
  • Community annotation for 5L0P at PDBWiki (http://pdbwiki.org)

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