5L1B Membrane Protein, Transport Protein date Jul 28, 2016
title Ampa Subtype Ionotropic Glutamate Receptor Glua2 In Apo Stat
authors M.V.Yelshanskaya, A.K.Singh, J.M.Sampson, A.I.Sobolevsky
compound source
Molecule: Glutamate Receptor 2,Glutamate Receptor 2
Chain: A, B, C, D
Fragment: Unp Residues 25-847, With Deletions Of 397-398, 4 566-587,Unp Residues 25-847, With Deletions Of 397-398, 402 587;
Synonym: Glur-2,Ampa-Selective Glutamate Receptor 2,Glur-B, Glutamate Receptor Ionotropic,Ampa 2,Glua2,Glur-2,Ampa-Sele Glutamate Receptor 2,Glur-B,Glur-K2,Glutamate Receptor Iono Ampa 2,Glua2;
Engineered: Yes
Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Cell: Embryoni Kidney Cell
Gene: Gria2, Glur2
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek293 Gnti
Expression_system_vector_type: Mammalian Expression
Expression_system_plasmid: Peg Bacmam
symmetry Space Group: P 1 21 1
R_factor 0.265 R_Free 0.292
crystal
cell
length a length b length c angle alpha angle beta angle gamma
92.051 309.391 110.021 90.00 93.77 90.00
method X-Ray Diffractionresolution 4.00 Å
ligand NAG enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceStructural Bases of Noncompetitive Inhibition of AMPA-Subtype Ionotropic Glutamate Receptors by Antiepileptic Drugs., Yelshanskaya MV, Singh AK, Sampson JM, Narangoda C, Kurnikova M, Sobolevsky AI, Neuron. 2016 Sep 21;91(6):1305-15. doi: 10.1016/j.neuron.2016.08.012. Epub 2016, Sep 8. PMID:27618672
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (455 Kb) [Save to disk]
  • Biological Unit Coordinates (5l1b.pdb1.gz) 447 Kb
  • LPC: Ligand-Protein Contacts for 5L1B
  • CSU: Contacts of Structural Units for 5L1B
  • Structure Factors (437 Kb)
  • Retrieve 5L1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5L1B from S2C, [Save to disk]
  • Re-refined 5l1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5L1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5L1B
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5l1b_B] [5l1b_C] [5l1b] [5l1b_A] [5l1b_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Domains found in 5L1B: [Lig_chan-Glu_bd] [PBPe ] by SMART
  • Other resources with information on 5L1B
  • Community annotation for 5L1B at PDBWiki (http://pdbwiki.org)

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